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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015807526.1_cds_XP_016494865.1_9238
CDS Infomation

[gene=LOC107814051] [db_xref=GeneID:107814051] [protein=probable zinc metalloprotease EGY2, chloroplastic isoform X4] [frame=2] [partial=5'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016494865.1] [location=complement(join(27606..27854,27975..28135,28290..28497,29934..30087,30878..30971,31101..31206,31294..31368,31612..31722,31859..31909,32100..32186,32312..32392,32529..>32607))] [gbkey=CDS]
Sequence

TTTGTCGCTCGCAATAAAGGAAGCGTTATTTGCAGATCAAGTGAGACAGAAACTGAGCCT
GATAAAAATGATGACAAGGATGAAAAGCTGGCCGAGGAAGCGGATGGGGCAAATCTGAAT
GAAGATAAGAGTCTTGAGCTGAACTCTCGGCCTGATCAGGATAAGGACCAACCATTGGGG
ATGTTGGAGAATACAAGTCTAGAAAATAATAACGGAGCTCAAGTGAATGAGCAGCCTGGA
ATTGAGGATGGCACTGAGGTTAAAGTTTCAAGTGGATCACCTCTTCCAGGTGTGAAGCCT
CTGCAACTCGATGAATCAATCAGGATTCCCAAGGAAACAATTGAGATTCTTAGAAATCAA
GTATTTGGTTTTGACACCTTTTTTGTTACAAGCCAGGAGCCATATGAGGGTGGAGTATTA
TTTAAAGGGAATTTACGTGGACAGGCTGCTACAGCTTATGAAAAAGTATCAAAGAGAATG
CAGGACAGACTTGGAGATGCATATAAACTTTTTCTTTTAAACAATCCGGAGGATGATAAG
CCTGTGGCAGTTGTGGTCCCGAGAATGACCCTGCAACCTGAAACTATAGCTGTTCCAGAA
TGGTTTGCAGCGGGGGCCTTTGGACTTGTTACAATATTCACTTTACTTCTTCGCAATGTG
CCGGCATTACAATCGAACTTGTTATCAGTTGTCGACAATCTTGACTTGTTGAAGGATGGA
CTACCTGGAGCTCTCATAACTGCCTTTGTTCTGGGGGTTCATGAAGTTAGCCATCTTTTA
GTTGCCAAAGAGGTTGGCGTTAAGCTCGGGGTTCCATATTTTGTTCCTAGCTGGCAGATA
GGCTCCTTTGGTGCTATAACAAGGATTGTAAATATTGTACCAAAGCGTGAAGATCTCTTG
AAAGTTGCAGCAGCTGGACCAATAGCTGGGTTCTCGGTGGGCCTTATTCTTTTGCTTTCA
GGATTCATCTTACCACCTACTGATGGCATTGGCATCATCGTCGATCCCTCTGTGTTCCAC
GAATCATTTCTAGCTGGCGGTATAGCCAAGCTTCTTCTAGGAGATGCTCTTAAGGAAGGA
ACTCCTATATCAGTAAATCCGCTTGTCATATGGGCCTGGGCTGGACTTCTCATTAATGCT
ATCAATAGTATTCCTGCAGGAGAGCTTGATGGTGGCTGGATAGCTTTTGCCACGTGGGGC
AGAAAGGCTTCAGCGCGCCTAAGTTCTTTATCTATTGGGCTACTAGGAATATCTGCATTG
TTTAGCGATGTAGCATTCTATTGGGTAGTGCTAATATTCTTCCTCCAAAGAGGGCCTATC
GCTCCACTATCAGAAGAAATCACTGATCCTGACAATAAATATATAGCTCTTGGAGTTGTG
GTTCTGCTCTTGGGCCTGTTGGTTTGCCTGCCATATCCCTTTCCCTTCTCTAGTGAAGCT
GCCACTGGTTTCTAG

Peptide Sequence

PEP ID

XP_016494865.1
PEP Infomation

PREDICTED: probable zinc metalloprotease EGY2, chloroplastic isoform X4 [Nicotiana tabacum]
Sequence

MNMPAVCRVSIVPVSPQCSSCCYNRLQPLLSSPSTGPQKHSSSINFPARHFLRFVARNKG
SVICRSSETETEPDKNDDKDEKLAEEADGANLNEDKSLELNSRPDQDKDQPLGMLENTSL
ENNNGAQVNEQPGIEDGTEVKVSSGSPLPGVKPLQLDESIRIPKETIEILRNQVFGFDTF
FVTSQEPYEGGVLFKGNLRGQAATAYEKVSKRMQDRLGDAYKLFLLNNPEDDKPVAVVVP
RMTLQPETIAVPEWFAAGAFGLVTIFTLLLRNVPALQSNLLSVVDNLDLLKDGLPGALIT
AFVLGVHEVSHLLVAKEVGVKLGVPYFVPSWQIGSFGAITRIVNIVPKREDLLKVAAAGP
IAGFSVGLILLLSGFILPPTDGIGIIVDPSVFHESFLAGGIAKLLLGDALKEGTPISVNP
LVIWAWAGLLINAINSIPAGELDGGWIAFATWGRKASARLSSLSIGLLGISALFSDVAFY
WVVLIFFLQRGPIAPLSEEITDPDNKYIALGVVVLLLGLLVCLPYPFPFSSEAATGF

Transcript Sequence

Gene sequence data has not been registered.